Structure & localization visualizations

These visualizations are generated when protein structure data is retrieved from AlphaFold or PDB, or when subcellular localization annotations are returned from UniProt or the Human Protein Atlas.

3D Protein Structure

Interactive 3D viewer (AlphaFold or PDB) with mutation highlighting, pLDDT confidence coloring, binding site annotation, and multiple rendering styles.

Triggered by: AlphaFold, PDB queries; ask "Show the protein structure"

Subcellular Location

Interactive cell diagram showing compartment localization — plasma membrane, nucleus, mitochondria, ER, Golgi, endosomes.

Triggered by: UniProt / HPA localization queries; ask "Where is this protein in the cell?"

Tissue Expression Map

Anatomogram showing expression levels across organs and tissues, color-coded by TPM intensity.

Triggered by: GTEx, Bgee tissue expression queries

Multiple Sequence Alignment

Color-coded residue alignment (Clustal, Zappo, or Taylor scheme) with per-position conservation scores and interactive pan/zoom.

Triggered by: MSA analysis; ask "Align these sequences"